Package: ypssc 1.1.0.9000

ypssc: Yeast-Proteome Secondary-Structure Calculator

An extension for 'NetSurfP-2.0' (Klausen et al. (2019) <doi:10.1002/prot.25674>) which is specifically designed to analyze the results of bottom-up-proteomics that is primarily analyzed with 'MaxQuant' (Cox, J., Mann, M. (2008) <doi:10.1038/nbt.1511>). This tool is designed to process a large number of yeast peptides that produced as a results of whole yeast cell-proteome digestion and provide a coherent picture of secondary structure of proteins.

Authors:Sajad Tasharofi [aut, cph], Shashank Kumbhare [aut, cre, cph], Bent Petersen [aut], Morteza Khaledi [aut], Amir Shahmoradi [aut]

ypssc_1.1.0.9000.tar.gz
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ypssc.pdf |ypssc.html✨
ypssc/json (API)

# Install 'ypssc' in R:
install.packages('ypssc', repos = c('https://shashankkumbhare.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/shashankkumbhare/ypssc/issues

On CRAN:

2.70 score 1 scripts 153 downloads 4 exports 46 dependencies

Last updated 3 years agofrom:96b5173268. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 05 2024
R-4.5-winNOTENov 05 2024
R-4.5-linuxNOTENov 05 2024
R-4.4-winNOTENov 05 2024
R-4.4-macNOTENov 05 2024
R-4.3-winNOTENov 05 2024
R-4.3-macNOTENov 05 2024

Exports:findAlphafindBetafindChainfindSecondary

Dependencies:cellrangerclicommonmarkcpp11crayondigestdplyreulerrevaluatefansigenericsGenSAgluehighrhmshunspellknitrlifecyclemagrittrPeptidespillarpkgconfigpolyclippolylabelrprettyunitsprogressR6RcppRcppArmadilloreadxlrematchrlangrstudioapispellingstringistringrsvDialogssvGUItibbletidyselectutf8vctrswithrxfunxml2yaml